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Diagnostic barcodes generated for the group Escherichia and Shigella (average length - 10 kbp.)

Graphical COG plot

 

*Genes with the same numbers are orthologs
GenomeLocus tagAnnotationLocation in barcodeCore/Accessory gene
NC_010658 Shigella boydii CDC 3083-94 chromosome, complete genome.
1SbBS512_E4682ampC,beta-lactamase (rev) [4374302..4375435][1-1134]Core
2SbBS512_E4709nsrR,transcriptional repressor NsrR (dir) [1185-1610]Core
3SbBS512_E2217thiK,thiamine kinase (rev) [2017631..2018455][1661-2485]Core
4SbBS512_E4916rimI,ribosomal-protein-alanine N-acetyltransferase [2536-2982]Core
5SbBS512_E0137sfsA,sugar fermentation stimulation protein [3033-3737]Core
6SbBS512_E4263hemD,uroporphyrinogen-III synthase (rev) [3788-4528]Core
7SbBS512_E4718hypothetical protein (rev) [4410515..4410802][4579-4866]Core
8SbBS512_E2076hypothetical protein (dir) [1887919..1888683][4917-5681]Core
9SbBS512_E0660tolR,colicin uptake protein TolR (dir) [5732-6160]Core
10SbBS512_E3615sterol-binding protein (dir) [3368195..3368719][6211-6735]Core
11SbBS512_E0093mutT,nucleoside triphosphate pyrophosphohydrolase [6786-7175]Core
12SbBS512_E0169rseP,zinc metallopeptidase RseP (dir) [183423..184775][7226-8578]Core
13SbBS512_E3885oxidoreductase, NAD-binding (dir) [3608498..3609424][8629-9555]Core
14SbBS512_E4665dipZ,thiol:disulfide interchange protein [9606-11303]Core
uniqueSbBS512_E4081hypothetical protein (dir) [3807218..3807436][11418-11687]Accessory
uniqueSbBS512_E2540hypothetical protein (rev) [2341212..2341325][12021-12185]Accessory
uniqueSbBS512_E1405hypothetical protein (rev) [1284000..1284122][12683-12856]Accessory
uniqueSbBS512_E3556hypothetical protein (dir) [3307567..3307704][13527-13715]Accessory
uniqueSbBS512_E3368hypothetical protein (dir) [3134969..3135106][14574-14762]Accessory
uniqueSbBS512_E4892hypothetical protein (dir) [4564533..4564646][15809-15973]Accessory
NC_004431 Escherichia coli CFT073 chromosome, complete genome.
1c5238ampC,beta-lactamase (rev) [4986532..4987665][1-1134]Core
2c5262yjeB,transcriptional repressor NsrR (dir) [1185-1610]Core
3c1379thiK,thiamine kinase (dir) [1306761..1307585][1661-2485]Core
4c5453rimI modification,ribosomal-protein-alanine [2536-2982]Core
5c0179sfsA Carbon compounds,sugar fermentation [3033-3737]Core
6c4723hemD Heme, porphyrin,uroporphyrinogen-III [3788-4528]Core
7c5276yjfN,hypothetical protein (rev) [5024085..5024387][4579-4881]Core
8c2221yoaD,hypothetical protein (dir) [2050069..2051697][4932-6560]Core
9c0817tolR,colicin uptake protein TolR (dir) [6611-7039]Core
10c3910yhbT,hypothetical protein (rev) [3734384..3734932][7090-7638]Core
11c0117mutT,nucleoside triphosphate pyrophosphohydrolase [7689-8087]Core
12c0213yaeL,zinc metallopeptidase RseP (dir) [206536..207933][8138-9535]Core
uniquec0887hypothetical protein (rev) [860501..860866][9648-10064]Accessory
uniquec4019hypothetical protein (dir) [3836886..3837014][10543-10722]Accessory
uniquec1279hypothetical protein (rev) [1232314..1233222][11380-12339]Accessory
NC_002655 Escherichia coli O157:H7 str. EDL933 chromosome, complete genome.
1Z5757ampC sensitivity,beta-lactamase (rev) [1-1134]Core
2Z5785yjeB,transcriptional repressor NsrR (dir) [1185-1610]Core
3Z1745thiK,thiamine kinase (dir) [1607462..1608286][1661-2485]Core
4Z5974rimI Ribosomes - maturation and modification,ribosomal-protein-alanine [2536-2982]Core
5Z0157sfsA Carbon compounds,sugar fermentation [3033-3737]Core
6Z5318hemD Heme, porphyrin,uroporphyrinogen-III [3788-4528]Core
7Z5795yjfN,hypothetical protein (rev) [5299730..5300032][4579-4881]Core
8Z2858hypothetical protein (dir) [2575430..2577058][4932-6560]Core
uniqueZ4323hypothetical protein (rev) [3926749..3927303][6669-7274]Accessory
uniqueZ4999hypothetical protein (dir) [4554445..4554789][7938-8333]Accessory
uniqueZ2994hypothetical protein (rev) [2688478..2688870][9392-9835]Accessory
uniqueZ3199wbdP polysaccharides and antigens,glycosyl [11337-12602]Accessory
uniqueZ1919hypothetical protein (rev) [1741797..1742546][15369-16169]Accessory
uniqueZ1919hypothetical protein (rev) [1741797..1742546][19736-20536]Accessory
NC_013364 Escherichia coli O111:H- str. 11128, complete genome.
1ECO111_5061ampC,beta-lactamase/D-alanine carboxypeptidase [1-1134]Core
2ECO111_5036nsrR,putative DNA-binding transcriptional [1185-1610]Core
3ECO111_1383ycfN,thiamin kinase (dir) [1415492..1416316][1661-2485]Core
4ECO111_5232rimI,acetylase for 30S ribosomal subunit [2536-2982]Core
5ECO111_0148sfsA,putative DNA-binding transcriptional [3033-3737]Core
6ECO111_4627hemD,uroporphyrinogen III synthase HemD [3788-4528]Core
7ECO111_5026yjfN,hypothetical protein (dir) [5117128..5117403][4579-4854]Core
8ECO111_2321yoaD,putative phosphodiesterase (dir) [4905-6503]Core
uniqueECO111_1422hypothetical protein (rev) [1446350..1447447][6612-7760]Accessory
uniqueECO111_0322hypothetical protein (rev) [341497..342039][8967-9560]Accessory
uniqueECO111_2372putative glycosidase (dir) [2371827..2372315][11360-11899]Accessory
uniqueECO111_0321hypothetical protein (dir) [341145..341504][14238-14648]Accessory
uniqueECO111_1459hypothetical protein (dir) [1475392..1475565][17397-17621]Accessory
uniqueECO111_1074hypothetical protein (dir) [1143515..1143628][20594-20758]Accessory
NC_004741 Shigella flexneri 2a str. 2457T, complete genome.
1S4573ampC,beta-lactamase (rev) [4474391..4475524][1-1134]Core
2S4601yjeB,transcriptional repressor NsrR (dir) [1185-1610]Core
3S1190thiK,thiamine kinase (dir) [1153870..1154694][1661-2485]Core
4S4676rimI modification,ribosomal-protein-alanine [2536-2982]Core
5S0141sfsA Carbon compounds,sugar fermentation [3033-3737]Core
6S3880hemD Heme, porphyrin,uroporphyrinogen-III [3788-4528]Core
7S4613yjfN,hypothetical protein (rev) [4512455..4512757][4579-4881]Core
8S1528hypothetical protein (rev) [1487193..1488791][4932-6530]Core
9S0572tolR,colicin uptake protein TolR (rev) [6581-7009]Core
uniqueS3059hypothetical protein (rev) [2945154..2946143][7119-8159]Accessory
uniqueS3060hypothetical protein (rev) [2946227..2946718][9259-9801]Accessory
uniqueS2221rfbF Sugar-nucleotide biosynthesis, conversions,dTDP-rhamnosyl [11443-12384]Accessory
uniqueS4813hypothetical protein (rev) [846032..846214][14967-15200]Accessory
uniqueS1441IS1294 transposase (rev) [1403767..1404591][18016-18891]Accessory
uniqueS1995bacteriophage protein (dir) [1920298..1920444][22582-22779]Accessory
NC_007946 Escherichia coli UTI89 chromosome, complete genome.
1UTI89_C4750ampC,beta-lactamase (rev) [4649610..4650743][1-1134]Core
2UTI89_C4778yjeB,transcriptional repressor NsrR (dir) [1185-1610]Core
3UTI89_C1234thiK,thiamine kinase (dir) [1208223..1209047][1661-2485]Core
4UTI89_C5082rimI Ribosomes - maturation and modification,ribosomal-protein-alanine [2536-2982]Core
5UTI89_C0160sfsA carbon compounds,sugar fermentation [3033-3737]Core
6UTI89_C4363hemD heme, porphyrin,uroporphyrinogen-III [3788-4528]Core
7UTI89_C4788yjfN,hypothetical protein (rev) [4687740..4688042][4579-4881]Core
8UTI89_C2011hypothetical protein (dir) [1925086..1926714][4932-6560]Core
9UTI89_C0734tolR,colicin uptake protein TolR (dir) [6611-7039]Core
10UTI89_C3584yhbT,hypothetical protein (rev) [3520587..3521135][7090-7638]Core
uniqueUTI89_C0911hypothetical protein (dir) [911530..911793][7749-8063]Accessory
uniqueUTI89_C3696hypothetical protein (dir) [3623075..3623203][8438-8617]Accessory
uniqueUTI89_C2274hypothetical protein (rev) [2214561..2215469][9171-10130]Accessory
uniqueUTI89_C2494hypothetical protein (dir) [2446454..2446672][11643-11912]Accessory
uniqueUTI89_C1520hypothetical protein (rev) [1430647..1431396][13694-14494]Accessory
uniqueUTI89_C1520hypothetical protein (rev) [1430647..1431396][17076-17876]Accessory
NC_007613 Shigella boydii Sb227 chromosome, complete genome.
1SBO_4306ampC,beta-lactamase (dir) [4355147..4356280][1-1134]Core
2SBO_4278yjeB,transcriptional repressor NsrR (rev) [1185-1610]Core
3SBO_1955thiK,thiamine kinase (rev) [1930472..1931296][1661-2485]Core
4SBO_4434rimI,ribosomal-protein-alanine N-acetyltransferase [2536-2982]Core
5SBO_0135sfsA,sugar fermentation stimulation protein [3033-3737]Core
6SBO_3815hemD,uroporphyrinogen-III synthase (rev) [3788-4528]Core
7SBO_4267yjfN,hypothetical protein (dir) [4317287..4317589][4579-4881]Core
8SBO_1269hypothetical protein (rev) [1260843..1261607][4932-5696]Core
9SBO_0597tolR,colicin uptake protein TolR (dir) [5747-6175]Core
uniqueSBO_4161hypothetical protein (rev) [4213293..4214075][6285-7118]Accessory
uniqueSBO_3736hypothetical protein (rev) [3752653..3753195][8011-8604]Accessory
uniqueSBO_3735hypothetical protein (dir) [3752301..3752660][10090-10500]Accessory
uniqueSBO_2840IS1294 transposase (dir) [2847760..2848959][12396-13646]Accessory
uniqueSBO_2127hypothetical protein (rev) [2101810..2102034][16792-17067]Accessory
uniqueSBO_2037hypothetical protein (rev) [2003392..2004078][20488-21225]Accessory
NC_011740 Escherichia fergusonii ATCC 35469 chromosome, complete genome.
1EFER_4204ampC sacculus and peptidoglycan,beta-lactamase [1-1134]Core
2EFER_4231nsrR,transcriptional repressor NsrR (dir) [1185-1610]Core
3EFER_1822thiK,thiamine kinase (rev) [1876935..1877747][1661-2473]Core
4EFER_4414rimI modification,ribosomal-protein-alanine [2524-2970]Core
5EFER_0169sfsA,sugar fermentation stimulation protein [3021-3725]Core
uniqueEFER_1298hypothetical protein (rev) [1336404..1337114][3831-4592]Accessory
uniqueEFER_4185ferredoxin (dir) [4293877..4294551][5409-6134]Accessory
uniqueEFER_3461transporter (dir) [3525628..3527946][7676-10045]Accessory
uniqueEFER_3450methyltransferase (dir) [3517535..3518602][13956-15074]Accessory
uniqueEFER_3451hypothetical protein (dir) [3518642..3519367][20103-20879]Accessory
NC_013361 Escherichia coli O26:H11 str. 11368 chromosome, complete genome.
1ECO26_5319ampC,beta-lactamase (rev) [5404091..5405224][1-1134]Core
2ECO26_5344nsrR,transcriptional repressor NsrR (dir) [1185-1610]Core
3ECO26_1439thiK,thiamine kinase (dir) [1452404..1453228][1661-2485]Core
4ECO26_5578rimI,ribosomal-protein-alanine N-acetyltransferase [2536-2982]Core
5ECO26_0149sfsA,sugar fermentation stimulation protein [3033-3737]Core
6ECO26_4785hemD,uroporphyrinogen-III synthase (dir) [3788-4528]Core
7ECO26_5354yjfN,hypothetical protein (rev) [5442419..5442694][4579-4854]Core
8ECO26_2584yoaD,phosphodiesterase (dir) [2508099..2509697][4905-6503]Core
9ECO26_0799tolR,colicin uptake protein TolR (dir) [6554-6982]Core
10ECO26_4262yhbT,lipid carrier protein (rev) [4229607..4230131][7033-7557]Core
uniqueECO26_3952hypothetical protein (rev) [3901163..3901687][7668-8243]Accessory
uniqueECO26_3945hypothetical protein (rev) [3894913..3895902][8879-9919]Accessory
uniqueECO26_2702glycosidase (dir) [2608358..2608846][11595-12134]Accessory
uniqueECO26_3946hypothetical protein (rev) [3895977..3896405][14349-14828]Accessory
uniqueECO26_2803hypothetical protein (rev) [2704759..2705040][17522-17854]Accessory
uniqueECO26_1232hypothetical protein (dir) [1261235..1261408][20880-21104]Accessory
NC_011353 Escherichia coli O157:H7 str. EC4115 chromosome, complete genome.
1ECH74115_5668ampC,beta-lactamase (rev) [5307291..5308424][1-1134]Core
2ECH74115_5694nsrR,transcriptional repressor NsrR (dir) [1185-1610]Core
3ECH74115_1486thiK,thiamine kinase (dir) [1465958..1466782][1661-2485]Core
4ECH74115_5885rimI,ribosomal-protein-alanine N-acetyltransferase [2536-2982]Core
5ECH74115_0155sfsA,sugar fermentation stimulation protein [3033-3737]Core
6ECH74115_5242hemD,uroporphyrinogen-III synthase (rev) [3788-4528]Core
7ECH74115_5704hypothetical protein (rev) [5344944..5345231][4579-4866]Core
8ECH74115_2544cyclic diguanylate phosphodiesterase (EAL [4917-6515]Core
uniqueECH74115_3057hypothetical protein (rev) [2832149..2833372][6624-7898]Accessory
uniqueECH74115_2926hypothetical protein (dir) [2709102..2709482][9231-9662]Accessory
uniqueECH74115_3056hypothetical protein (rev) [2831650..2832102][11426-11929]Accessory
uniqueECH74115_0256hypothetical protein (rev) [274470..274616][14196-14393]Accessory
uniqueECH74115_0946hypothetical protein (dir) [958123..958266][16857-17051]Accessory
uniqueECH74115_3238hypothetical protein (dir) [2975980..2977041][19709-20821]Accessory
NC_012947 Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, complete genome.
1ECBD_3879ampC,beta-lactamase (dir) [4056453..4057586][1-1134]Core
2ECBD_3856transcriptional repressor NsrR (rev) [4029338..4029763][1185-1610]Core
3ECBD_2495thiK,thiamine kinase (rev) [2615734..2616558][1661-2485]Core
4ECBD_3648rimI,ribosomal-protein-alanine N-acetyltransferase [2536-2982]Core
5ECBD_3473sugar fermentation stimulation protein [3033-3737]Core
6ECBD_4238hemD,uroporphyrinogen-III synthase (dir) [3788-4528]Core
7ECBD_3846hypothetical protein (dir) [4019661..4019936][4579-4854]Core
8ECBD_1827diguanylate phosphodiesterase (rev) [1936727..1938325][4905-6503]Core
9ECBD_2922colicin uptake protein TolR (rev) [3047447..3047875][6554-6982]Core
10ECBD_0583sterol-binding domain protein (dir) [604029..604553][7033-7557]Core
11ECBD_3518nucleoside triphosphate pyrophosphohydrolase [7608-7997]Core
12ECBD_3443zinc metallopeptidase RseP (rev) [3581643..3582995][8048-9400]Core
uniqueECBD_0727hypothetical protein (rev) [748802..748915][9513-9677]Accessory
uniqueECBD_0030hypothetical protein (dir) [30741..30989][9904-10203]Accessory
uniqueECBD_2202YcfA family protein (rev) [2318858..2319034][10729-10956]Accessory
uniqueECBD_0349hypothetical protein (rev) [386951..387070][11709-11879]Accessory
uniqueECBD_2579hypothetical protein (rev) [2698957..2699166][12802-13062]Accessory
uniqueECBD_2904excisionase (dir) [3028186..3028404][14245-14514]Accessory
NC_008563 Escherichia coli APEC O1 chromosome, complete genome.
1APECO1_2239ampC,beta-lactamase (rev) [4785334..4786596][1-1263]Core
2APECO1_2214yjeB,transcriptional repressor NsrR (dir) [1314-1739]Core
3APECO1_187thiK,thiamine kinase (dir) [1145611..1146435][1790-2614]Core
4APECO1_2053rimI,ribosomal-protein-alanine N-acetyltransferase [2665-3111]Core
5APECO1_1839sugar fermentation stimulation protein [3162-3866]Core
6APECO1_2674hemD,uroporphyrinogen-III synthase (rev) [3917-4657]Core
7APECO1_2204yjfN,hypothetical protein (rev) [4823464..4823766][4708-5010]Core
8APECO1_872yoaD,hypothetical protein (dir) [1906332..1907939][5061-6668]Core
9APECO1_1343colicin uptake protein TolR (dir) [741192..741620][6719-7147]Core
uniqueAPECO1_1100hypothetical protein (rev) [2163701..2164540][7257-8147]Accessory
uniqueAPECO1_4022adenine methylase (dir) [2776328..2776978][9097-9798]Accessory
uniqueAPECO1_4474LysA protein (dir) [935974..936399][11449-11925]Accessory
uniqueAPECO1_3885hypothetical protein (rev) [2942447..2942851][14052-14507]Accessory
uniqueAPECO1_3885hypothetical protein (rev) [2942447..2942851][17089-17544]Accessory
uniqueAPECO1_4462hypothetical protein (dir) [922629..922928][20581-20931]Accessory
NC_011415 Escherichia coli SE11 chromosome, complete genome.
1ECSE_4452ampC,beta-lactamase (rev) [4649869..4651002][1-1134]Core
2ECSE_4475transcriptional repressor NsrR (dir) [4677693..4678118][1185-1610]Core
3ECSE_1171thiK,thiamine kinase (dir) [1246091..1246915][1661-2485]Core
4ECSE_4647rimI,ribosomal-protein-alanine N-acetyltransferase [2536-2982]Core
5ECSE_0146sugar fermentation stimulation protein [3033-3737]Core
6ECSE_4085hemD,uroporphyrinogen-III synthase (rev) [3788-4528]Core
7ECSE_4486hypothetical protein (rev) [4687520..4687795][4579-4854]Core
8ECSE_1989hypothetical protein (dir) [2069502..2071100][4905-6503]Core
9ECSE_0798colicin uptake protein TolR (dir) [858036..858464][6554-6982]Core
10ECSE_3443hypothetical protein (rev) [3570861..3571385][7033-7557]Core
11ECSE_0101nucleoside triphosphate pyrophosphohydrolase [7608-7997]Core
12ECSE_0175zinc metallopeptidase RseP (dir) [197071..198423][8048-9400]Core
uniqueECSE_1695hypothetical protein (rev) [1780811..1781167][9513-9920]Accessory
uniqueECSE_4341hypothetical protein (dir) [4533208..4533333][10390-10566]Accessory
uniqueECSE_1778hypothetical protein (rev) [1867692..1867844][11212-11415]Accessory
uniqueECSE_4105hypothetical protein (rev) [4263162..4263440][12264-12593]Accessory
uniqueECSE_4547hypothetical protein (dir) [4746533..4746721][13771-14010]Accessory
uniqueECSE_1246hypothetical protein (dir) [1315133..1315279][15427-15624]Accessory
NC_011748 Escherichia coli 55989 chromosome, complete genome.
1EC55989_4707ampC sacculus and peptidoglycan,beta-lactamase [1-1134]Core
2EC55989_4733nsrR,transcriptional repressor NsrR (dir) [1185-1610]Core
3EC55989_1218thiK,thiamine kinase (dir) [1273398..1274222][1661-2485]Core
4EC55989_5034rimI modification,ribosomal-protein-alanine [2536-2982]Core
5EC55989_0140sfsA,sugar fermentation stimulation protein [3033-3737]Core
6EC55989_4274hemD,uroporphyrinogen-III synthase (rev) [3788-4528]Core
7EC55989_4745yjfN,hypothetical protein (rev) [4861584..4861859][4579-4854]Core
8EC55989_1988adrB,cyclic di-GMP phosphodiesterase (dir) [4905-6503]Core
9EC55989_0723tolR,colicin uptake protein TolR (dir) [6554-6982]Core
10EC55989_3577yhbT,lipid carrier protein (rev) [3658022..3658546][7033-7557]Core
11EC55989_0095mutT,nucleoside triphosphate pyrophosphohydrolase [7608-7997]Core
uniqueEC55989_1387hypothetical protein (rev) [1431288..1432355][8109-9227]Accessory
uniqueEC55989_2131hypothetical protein (rev) [2176920..2177315][10407-10853]Accessory
uniqueEC55989_4141hypothetical protein (rev) [4228537..4228788][12479-12781]Accessory
uniqueEC55989_4293hypothetical protein (rev) [4386518..4386796][14709-15038]Accessory
uniqueEC55989_2599transcriptional repressor arc (modular [17295-17534]Accessory
uniqueEC55989_0299ykgL,hypothetical protein (dir) [326503..326730][20030-20308]Accessory
NC_011741 Escherichia coli IAI1 chromosome, complete genome.
1ECIAI1_4387ampC sacculus and peptidoglycan,beta-lactamase [1-1134]Core
2ECIAI1_4411nsrR,transcriptional repressor NsrR (dir) [1185-1610]Core
3ECIAI1_1143thiK,thiamine kinase (dir) [1205045..1205869][1661-2485]Core
4ECIAI1_4595rimI modification,ribosomal-protein-alanine [2536-2982]Core
5ECIAI1_0144sfsA,sugar fermentation stimulation protein [3033-3737]Core
6ECIAI1_3990hemD,uroporphyrinogen-III synthase (rev) [3788-4528]Core
7ECIAI1_4421yjfN,hypothetical protein (rev) [4500100..4500375][4579-4854]Core
8ECIAI1_1884adrB,putative cyclic di-GMP phosphodiesterase [4905-6503]Core
9ECIAI1_0713tolR,colicin uptake protein TolR (dir) [6554-6982]Core
10ECIAI1_3307yhbT,putative lipid carrier protein (rev) [7033-7557]Core
uniqueECIAI1_0248hypothetical protein (rev) [267665..267811][7668-7865]Accessory
uniqueECIAI1_1937putative CymC protein (dir) [1995060..1995548][8123-8662]Accessory
uniqueECIAI1_1567hypothetical protein (dir) [1653324..1654328][9459-10514]Accessory
uniqueECIAI1_1567hypothetical protein (dir) [1653324..1654328][12366-13421]Accessory
uniqueECIAI1_3850hypothetical protein (rev) [3924662..3924913][16328-16630]Accessory
NC_009801 Escherichia coli E24377A chromosome, complete genome.
1EcE24377A_4709ampC,beta-lactamase (rev) [4710491..4711624][1-1134]Core
2EcE24377A_4737nsrR,transcriptional repressor NsrR (dir) [1185-1610]Core
3EcE24377A_1228thiK,thiamine kinase (dir) [1240691..1241515][1661-2485]Core
4EcE24377A_4968rimI,ribosomal-protein-alanine N-acetyltransferase [2536-2982]Core
5EcE24377A_0150sfsA,sugar fermentation stimulation protein [3033-3737]Core
6EcE24377A_4319hemD,uroporphyrinogen-III synthase (rev) [3788-4528]Core
7EcE24377A_4748hypothetical protein (rev) [4748142..4748429][4579-4866]Core
8EcE24377A_2474hypothetical protein (dir) [2459015..2460571][4917-6473]Core
9EcE24377A_0767tolR,colicin uptake protein TolR (dir) [6524-6952]Core
10EcE24377A_3639sterol-binding protein (rev) [3637931..3638455][7003-7527]Core
11EcE24377A_0101mutT,nucleoside triphosphate pyrophosphohydrolase [7578-7967]Core
12EcE24377A_0180rseP,zinc metallopeptidase RseP (dir) [197176..198528][8018-9370]Core
uniqueEcE24377A_0963hypothetical protein (dir) [981529..981642][9483-9647]Accessory
uniqueEcE24377A_2998hypothetical protein (rev) [2998752..2998919][9874-10092]Accessory
uniqueEcE24377A_1867hypothetical protein (rev) [1860017..1860169][10537-10740]Accessory
uniqueEcE24377A_3224hypothetical protein (dir) [3244506..3244697][11388-11630]Accessory
uniqueEcE24377A_2137hypothetical protein (rev) [2115372..2115512][12520-12711]Accessory
uniqueEcE24377A_3869hypothetical protein (dir) [3841030..3841149][13792-13962]Accessory
NC_013008 Escherichia coli O157:H7 str. TW14359 chromosome, complete genome.
1ECSP_5252ampC,beta-lactamase (rev) [5263352..5264485][1-1134]Core
2ECSP_5278nsrR,transcriptional repressor NsrR (dir) [1185-1610]Core
3ECSP_1408thiK,thiamine kinase (dir) [1466246..1467070][1661-2485]Core
4ECSP_5455rimI,ribosomal-protein-alanine N-acetyltransferase [2536-2982]Core
5ECSP_0147sfsA,sugar fermentation stimulation protein [3033-3737]Core
6ECSP_4856hemD,uroporphyrinogen-III synthase (rev) [3788-4528]Core
7ECSP_5288yjfN,hypothetical protein (rev) [5301005..5301280][4579-4854]Core
8ECSP_2388yoaD,phosphodiesterase (dir) [2405531..2407129][4905-6503]Core
9ECSP_0791tolR,colicin uptake protein TolR (dir) [6554-6982]Core
10ECSP_4132yhbT,lipid carrier protein (rev) [4101058..4101582][7033-7557]Core
11ECSP_0102mutT,nucleoside triphosphate pyrophosphohydrolase [7608-8006]Core
12ECSP_0175rseP,zinc metallopeptidase RseP (dir) [199871..201223][8057-9409]Core
13ECSP_4395yhhX,dehydrogenase (rev) [4358143..4359180][9460-10497]Core
uniqueECSP_0436hypothetical protein (rev) [461336..461458][10611-10784]Accessory
NC_008253 Escherichia coli 536, complete genome.
1ECP_4396ampC,beta-lactamase (rev) [4607984..4609246][1-1263]Core
2ECP_4423transcriptional repressor NsrR (dir) [4635807..4636232][1314-1739]Core
3ECP_1098thiK,thiamine kinase (dir) [1154139..1154963][1790-2614]Core
4ECP_4756rimI,ribosomal-protein-alanine N-acetyltransferase [2665-3111]Core
5ECP_0156sugar fermentation stimulation protein [3162-3866]Core
6ECP_3996hemD,uroporphyrinogen-III synthase (rev) [3917-4657]Core
7ECP_4433hypothetical protein (rev) [4645544..4645831][4708-4995]Core
8ECP_1758hypothetical protein (dir) [1810277..1811875][5046-6644]Core
9ECP_0749colicin uptake protein TolR (dir) [791222..791650][6695-7123]Core
10ECP_3245hypothetical protein (rev) [3411202..3411750][7174-7722]Core
11ECP_0101nucleoside triphosphate pyrophosphohydrolase [7773-8171]Core
uniqueECP_1144phage associated protein (rev) [1194610..1194987][8283-8711]Accessory
uniqueECP_1145hypothetical protein (rev) [1194965..1196026][9201-10313]Accessory
uniqueECP_2674hypothetical protein (rev) [2815061..2815228][11915-12133]Accessory
uniqueECP_3847hypothetical protein (rev) [4015823..4016038][13953-14219]Accessory
uniqueECP_4491hypothetical protein (dir) [4704129..4704362][16305-16589]Accessory
uniqueECP_2891hypothetical protein (dir) [3059937..3060119][18959-19192]Accessory
NC_011751 Escherichia coli UMN026 chromosome, complete genome.
1ECUMN_4686ampC sacculus and peptidoglycan,beta-lactamase [1-1134]Core
2ECUMN_4711nsrR,transcriptional repressor NsrR (dir) [1185-1610]Core
3ECUMN_1284thiK,thiamine kinase (dir) [1329653..1330477][1661-2485]Core
4ECUMN_4996rimI modification,ribosomal-protein-alanine [2536-2982]Core
5ECUMN_0143sfsA,sugar fermentation stimulation protein [3033-3737]Core
uniqueECUMN_1059hypothetical protein (rev) [1090638..1090820][3843-4076]Accessory
uniqueECUMN_1685yncN,hypothetical protein (dir) [1701117..1701293][4365-4592]Accessory
uniqueECUMN_3950putative transporter (dir) [4055064..4057382][5108-7477]Accessory
uniqueECUMN_3939putative methyltransferase (dir) [4046973..4048040][10362-11480]Accessory
uniqueECUMN_3940hypothetical protein (dir) [4048057..4048803][15483-16280]Accessory
NC_011745 Escherichia coli ED1a chromosome, complete genome.
1ECED1_4939ampC sacculus and peptidoglycan,beta-lactamase [1-1134]Core
2ECED1_4963nsrR,transcriptional repressor NsrR (dir) [1185-1610]Core
3ECED1_1249thiK,thiamine kinase (dir) [1249241..1250065][1661-2485]Core
4ECED1_5243rimI modification,ribosomal-protein-alanine [2536-2982]Core
5ECED1_0151sfsA,sugar fermentation stimulation protein [3033-3737]Core
6ECED1_4489hemD,uroporphyrinogen-III synthase (rev) [3788-4528]Core
7ECED1_4975yjfN,hypothetical protein (rev) [4933701..4933976][4579-4854]Core
8ECED1_2018adrB,putative cyclic di-GMP phosphodiesterase [4905-6503]Core
9ECED1_0705tolR,colicin uptake protein TolR (dir) [6554-6982]Core
10ECED1_3817yhbT,putative lipid carrier protein (rev) [7033-7557]Core
11ECED1_0100mutT,nucleoside triphosphate pyrophosphohydrolase [7608-8006]Core
uniqueECED1_2120hypothetical protein (rev) [2061247..2061546][8118-8468]Accessory
uniqueECED1_1790hypothetical protein (rev) [1751707..1751892][8880-9116]Accessory
uniqueECED1_1100cro,regulatory protein cro (dir) [1112978..1113178][9764-10015]Accessory
uniqueECED1_1153hypothetical protein (dir) [1150037..1151302][10914-12230]Accessory
uniqueECED1_5036hypothetical protein (rev) [4969073..4969267][14445-14690]Accessory
uniqueECED1_2134hypothetical protein (dir) [2069198..2069344][17150-17347]Accessory
NC_013941 Escherichia coli O55:H7 str. CB9615 chromosome, complete genome.
1G2583_4979ampC,beta-lactamase (rev) [5080501..5081634][1-1134]Core
2G2583_5005nsrR,transcriptional repressor NsrR (dir) [1185-1610]Core
3G2583_1366thiK,thiamine kinase (dir) [1420792..1421616][1661-2485]Core
4G2583_5174rimI,ribosomal-protein-alanine acetyltransferase [2536-2982]Core
5G2583_0150sfsA,sugar fermentation stimulation protein [3033-3737]Core
6G2583_4600hemD,Uroporphyrinogen-III synthase (rev) [3788-4528]Core
7G2583_5015yjfN,hypothetical protein (rev) [5118154..5118456][4579-4881]Core
8G2583_2263yoaD,hypothetical protein (dir) [2291184..2292812][4932-6560]Core
uniqueG2583_0667hypothetical protein (rev) [702448..702825][6669-7097]Accessory
uniqueG2583_0668hypothetical protein (rev) [702803..703864][7584-8696]Accessory
uniqueG2583_4745hypothetical protein (dir) [4820705..4820941][10295-10582]Accessory
uniqueG2583_1100hypothetical protein (rev) [1130098..1130280][12468-12701]Accessory
uniqueG2583_2213hypothetical protein (dir) [2243277..2244080][14820-15674]Accessory
uniqueG2583_3044polyferredoxin (rev) [3102211..3103065][18647-19552]Accessory
NC_010498 Escherichia coli SMS-3-5 chromosome, complete genome.
1EcSMS35_4621ampC,beta-lactamase (rev) [4722460..4723593][1-1134]Core
2EcSMS35_4649nsrR,transcriptional repressor NsrR (dir) [1185-1610]Core
3EcSMS35_2020thiK,thiamine kinase (rev) [2042443..2043267][1661-2485]Core
4EcSMS35_4920rimI,ribosomal-protein-alanine N-acetyltransferase [2536-2982]Core
5EcSMS35_0157sfsA,sugar fermentation stimulation protein [3033-3737]Core
uniqueEcSMS35_2232hypothetical protein (rev) [2255113..2255226][3843-4007]Accessory
uniqueEcSMS35_2837hypothetical protein (rev) [2913249..2913416][4227-4445]Accessory
uniqueEcSMS35_1259hypothetical protein (rev) [1257535..1257654][4883-5053]Accessory
uniqueEcSMS35_4309hypothetical protein (dir) [4410704..4410874][5661-5882]Accessory
uniqueEcSMS35_4829hypothetical protein (dir) [4925727..4930649][6711-11684]Accessory
uniqueEcSMS35_4822hypothetical protein (rev) [4909284..4910387][17486-18640]Accessory
NC_016902 Escherichia coli KO11FL chromosome, complete genome.
1EKO11_4163beta-lactamase (dir) [4378978..4380111][1-1134]Core
2EKO11_4134AsnC family transcriptional regulator [1185-1610]Core
3EKO11_2728thiamine kinase (rev) [2833814..2834638][1661-2485]Core
4EKO11_3942ribosomal-protein-alanine acetyltransferase [2536-2982]Core
5EKO11_3770sugar fermentation stimulation protein [3033-3737]Core
6EKO11_4555uroporphyrinogen III synthase HEM4 (dir) [3788-4528]Core
7EKO11_4124hypothetical protein (dir) [4339348..4339623][4579-4854]Core
8EKO11_1958diguanylate phosphodiesterase (rev) [2057693..2059291][4905-6503]Core
9EKO11_3141protein TolR (rev) [3267527..3267955][6554-6982]Core
10EKO11_0560Sterol-binding domain-containing protein [7033-7557]Core
11EKO11_3815mutator MutT protein (rev) [3998795..3999184][7608-7997]Core
12EKO11_3742membrane-associated zinc metalloprotease [8048-9400]Core
uniqueEKO11_4377hypothetical protein (rev) [4636186..4636509][9513-9887]Accessory
uniqueEKO11_0030hypothetical protein (dir) [30149..30400][10324-10626]Accessory
uniqueEKO11_1670hypothetical protein (dir) [1770116..1770286][11365-11586]Accessory
uniqueEKO11_4419phage lysis protein LysA (rev) [4676339..4676764][12546-13022]Accessory
NC_013353 Escherichia coli O103:H2 str. 12009, complete genome.
1ECO103_4948ampC,beta-lactamase/D-alanine carboxypeptidase [1-1134]Core
2ECO103_4971nsrR,DNA-binding transcriptional regulator [1185-1610]Core
3ECO103_1151ycfN,thiamin kinase (dir) [1247968..1248792][1661-2485]Core
4ECO103_5157rimI,acetylase for 30S ribosomal subunit [2536-2982]Core
5ECO103_0146sfsA,DNA-binding transcriptional regulator [3033-3737]Core
6ECO103_4363hemD,uroporphyrinogen III synthase HemD [3788-4528]Core
7ECO103_4981yjfN,hypothetical protein (rev) [5174070..5174345][4579-4854]Core
8ECO103_2004yoaD,phosphodiesterase (dir) [2087619..2089217][4905-6503]Core
9ECO103_0733tolR,membrane spanning protein TolR (dir) [6554-6982]Core
uniqueECO103_2105hypothetical protein (rev) [2180890..2181084][7092-7337]Accessory
uniqueECO103_3438hypothetical protein (rev) [3504209..3504838][7642-8322]Accessory
uniqueECO103_4523hypothetical protein (dir) [4653054..4653440][9307-9744]Accessory
uniqueECO103_4531hypothetical protein (rev) [4658268..4658453][11166-11402]Accessory
uniqueECO103_2881adenine methylase (dir) [2921486..2922112][13060-13737]Accessory
uniqueECO103_2813hypothetical protein (rev) [2870277..2871542][16072-17388]Accessory
NC_011750 Escherichia coli IAI39 chromosome, complete genome.
1ECIAI39_4617ampC sacculus and peptidoglycan,beta-lactamase [1-1134]Core
2ECIAI39_4643nsrR,transcriptional repressor NsrR (dir) [1185-1610]Core
3ECIAI39_2054thiK,thiamine kinase (rev) [2102612..2103436][1661-2485]Core
4ECIAI39_4844rimI modification,ribosomal-protein-alanine [2536-2982]Core
5ECIAI39_0150sfsA,sugar fermentation stimulation protein [3033-3737]Core
6ECIAI39_2986hemD,uroporphyrinogen-III synthase (dir) [3788-4528]Core
7ECIAI39_4653yjfN,hypothetical protein (rev) [4855483..4855758][4579-4854]Core
8ECIAI39_1237adrB,putative cyclic di-GMP phosphodiesterase [4905-6503]Core
9ECIAI39_0713tolR,colicin uptake protein TolR (dir) [6554-6982]Core
10ECIAI39_3654yhbT,putative lipid carrier protein (rev) [7033-7557]Core
11ECIAI39_0102mutT,nucleoside triphosphate pyrophosphohydrolase [7608-8006]Core
uniqueECIAI39_0774hypothetical protein (dir) [815198..815341][8118-8312]Accessory
uniqueECIAI39_2703putative adenine methylase from phage [8568-9281]Accessory
uniqueECIAI39_3270hypothetical protein (rev) [3419033..3419269][10250-10537]Accessory
uniqueECIAI39_3179hypothetical protein (dir) [3315711..3315986][11793-12119]Accessory
uniqueECIAI39_0508hypothetical protein (dir) [537132..537356][13701-13976]Accessory
uniqueECIAI39_4613insB,IS1 transposase InsAB' (rev) [4815759..4816262][15833-16387]Accessory
NC_009800 Escherichia coli HS, complete genome.
1EcHS_A4394ampC,beta-lactamase (rev) [4403107..4404240][1-1134]Core
2EcHS_A4421nsrR,transcriptional repressor NsrR (dir) [1185-1610]Core
3EcHS_A1229thiK,thiamine kinase (dir) [1226940..1227764][1661-2485]Core
4EcHS_A4607rimI,ribosomal-protein-alanine N-acetyltransferase [2536-2982]Core
5EcHS_A0149sfsA,sugar fermentation stimulation protein [3033-3737]Core
6EcHS_A4024hemD,uroporphyrinogen-III synthase (rev) [3788-4528]Core
7EcHS_A4432hypothetical protein (rev) [4440753..4441040][4579-4866]Core
8EcHS_A1905cyclic diguanylate phosphodiesteras domain-containing [4917-6515]Core
9EcHS_A0791tolR,colicin uptake protein TolR (dir) [6566-6994]Core
10EcHS_A3349sterol-binding protein (rev) [3351678..3352202][7045-7569]Core
11EcHS_A0105mutT,nucleoside triphosphate pyrophosphohydrolase [7620-8009]Core
12EcHS_A0178rseP,zinc metallopeptidase RseP (dir) [194703..196055][8060-9412]Core
uniqueEcHS_A4289hypothetical protein (dir) [4293106..4293231][9525-9701]Accessory
uniqueEcHS_A0993hypothetical protein (dir) [992467..992580][9940-10104]Accessory
uniqueEcHS_A1733hypothetical protein (rev) [1756134..1756286][10507-10710]Accessory
uniqueEcHS_A2997hypothetical protein (rev) [3008820..3009056][11316-11603]Accessory
uniqueEcHS_A4496hypothetical protein (dir) [4502511..4502699][12496-12735]Accessory
uniqueEcHS_A3056hypothetical protein (dir) [3068558..3068749][13867-14109]Accessory
NC_012967 Escherichia coli B str. REL606 chromosome, complete genome.
1ECB_04022ampC,beta-lactamase (rev) [4356522..4357655][1-1134]Core
2ECB_04045yjeB,transcriptional repressor NsrR (dir) [1185-1610]Core
3ECB_01102thiK,thiamine kinase (dir) [1177829..1178653][1661-2485]Core
4ECB_04248rimI,ribosomal-protein-alanine N-acetyltransferase [2536-2982]Core
5ECB_00145sfsA,sugar fermentation stimulation protein [3033-3737]Core
6ECB_03679hemD,uroporphyrinogen-III synthase (rev) [3788-4528]Core
7ECB_04055yjfN,hypothetical protein (rev) [4394172..4394447][4579-4854]Core
8ECB_01785yoaD,putative phosphodiesterase (dir) [4905-6503]Core
9ECB_00698tolR,colicin uptake protein TolR (dir) [6554-6982]Core
uniqueECB_02003hypothetical protein (rev) [2115174..2116391][7092-8360]Accessory
uniqueECB_02002hypothetical protein (rev) [2114673..2115038][9688-10104]Accessory
uniqueECB_02010bacteriophage P2 Cox-like protein (rev) [11848-12174]Accessory
uniqueECB_02007hypothetical protein (rev) [2119257..2119559][14244-14597]Accessory
uniqueECB_02008hypothetical protein (rev) [2119556..2119780][17020-17295]Accessory
uniqueECB_00254ykgL,hypothetical protein (dir) [282292..282519][19993-20271]Accessory
NC_010473 Escherichia coli str. K-12 substr. DH10B chromosome, complete genome.
1ECDH10B_4345ampC,beta-lactamase (rev) [4476196..4477329][1-1134]Core
2ECDH10B_4373nsrR,transcriptional repressor NsrR (dir) [1185-1610]Core
3ECDH10B_1178thiK,thiamine kinase (dir) [1217928..1218752][1661-2485]Core
4ECDH10B_4530rimI,ribosomal-protein-alanine N-acetyltransferase [2536-2982]Core
5ECDH10B_0126sfsA,sugar fermentation stimulation protein [3033-3737]Core
6ECDH10B_3995hemD,uroporphyrinogen-III synthase (rev) [3788-4528]Core
7ECDH10B_4383yjfN,hypothetical protein (rev) [4514402..4514677][4579-4854]Core
8ECDH10B_1953yoaD,phosphodiesterase (dir) [1987022..1988620][4905-6503]Core
uniqueECDH10B_1567yncN,hypothetical protein (dir) [1597905..1598081][6612-6839]Accessory
uniqueECDH10B_1478racR,Rac prophage; DNA-binding transcriptiona [7125-7652]Accessory
uniqueECDH10B_0283ykgL,hypothetical protein (dir) [286886..287113][8465-8743]Accessory
uniqueECDH10B_4410ytfI,hypothetical protein (dir) [4536092..4537030][9834-10823]Accessory
uniqueECDH10B_4410ytfI,hypothetical protein (dir) [4536092..4537030][12903-13892]Accessory
uniqueECDH10B_0144yaeI,phosphodiesterase YaeI (rev) [158361..159173][16961-17824]Accessory
NC_002695 Escherichia coli O157:H7 str. Sakai chromosome, complete genome.
1ECs5131ampC,beta-lactamase (rev) [5232091..5233224][1-1134]Core
2ECs5154transcriptional repressor NsrR (dir) [5259916..5260341][1185-1610]Core
3ECs1484thiK,thiamine kinase (dir) [1522367..1523191][1661-2485]Core
4ECs5331rimI,ribosomal-protein-alanine N-acetyltransferase [2536-2982]Core
5ECs0150sugar fermentation stimulation protein [3033-3737]Core
6ECs4734hemD,uroporphyrinogen-III synthase (rev) [3788-4528]Core
7ECs5164hypothetical protein (rev) [5269744..5270031][4579-4866]Core
8ECs2524hypothetical protein (dir) [2500226..2501854][4917-6545]Core
uniqueECs2263hypothetical protein (rev) [2239448..2239576][6654-6833]Accessory
uniqueECs1184hypothetical protein (rev) [1255889..1256410][7071-7643]Accessory
uniqueECs5484hypothetical protein (dir) [3043126..3043344][8453-8722]Accessory
uniqueECs2840glycosyl transferase family protein (rev) [9801-11066]Accessory
uniqueECs1578hypothetical protein (dir) [1597550..1597735][13410-13646]Accessory
uniqueECs2473lipoprotein (dir) [2450309..2451031][16226-16999]Accessory
NC_007606 Shigella dysenteriae Sd197, complete genome.
1SDY_4394ampC,beta-lactamase (rev) [4111751..4112884][1-1134]Core
2SDY_4411yjeB,transcriptional repressor NsrR (rev) [1185-1610]Core
3SDY_2044thiK,thiamine kinase (rev) [1855918..1856742][1661-2485]Core
4SDY_4632rimI,ribosomal-protein-alanine N-acetyltransferase [2536-2982]Core
5SDY_0162sfsA,sugar fermentation stimulation protein [3033-3737]Core
6SDY_3942hemD,uroporphyrinogen-III synthase (dir) [3788-4528]Core
7SDY_4357yjfN,hypothetical protein (rev) [4083607..4083909][4579-4881]Core
8SDY_1960hypothetical protein (dir) [1782522..1783202][4932-5612]Core
9SDY_0686tolR,colicin uptake protein TolR (dir) [5663-6091]Core
uniqueSDY_3167hypothetical protein (dir) [2933580..2933867][6201-6539]Accessory
uniqueSDY_2210rfbR,rhamnosyl transferase II (dir) [2012581..2013429][6937-7836]Accessory
uniqueSDY_1770hypothetical protein (rev) [1609746..1610159][9133-9597]Accessory
uniqueSDY_1924hypothetical protein (rev) [1753199..1753402][11358-11612]Accessory
uniqueSDY_1245hypothetical protein (dir) [1151608..1151823][13627-13893]Accessory
uniqueSDY_1670hypothetical protein (rev) [1531311..1532576][16174-17490]Accessory
NC_011742 Escherichia coli S88 chromosome, complete genome.
1ECS88_4738ampC sacculus and peptidoglycan,beta-lactamase [1-1134]Core
2ECS88_4764nsrR,transcriptional repressor NsrR (dir) [1185-1610]Core
3ECS88_1120thiK,thiamine kinase (dir) [1149199..1150023][1661-2485]Core
4ECS88_4994rimI modification,ribosomal-protein-alanine [2536-2982]Core
5ECS88_0156sfsA,sugar fermentation stimulation protein [3033-3737]Core
6ECS88_4226hemD,uroporphyrinogen-III synthase (rev) [3788-4528]Core
7ECS88_4774yjfN,hypothetical protein (rev) [4738126..4738401][4579-4854]Core
8ECS88_1867adrB,cyclic di-GMP phosphodiesterase (dir) [4905-6503]Core
9ECS88_0761tolR,colicin uptake protein TolR (dir) [6554-6982]Core
10ECS88_3541yhbT,lipid carrier protein (rev) [3508279..3508803][7033-7557]Core
11ECS88_0103mutT,nucleoside triphosphate pyrophosphohydrolase [7608-8006]Core
12ECS88_0186yaeL,zinc metallopeptidase RseP (dir) [201346..202698][8057-9409]Core
uniqueECS88_2225hypothetical protein (rev) [2203472..2203666][9522-9767]Accessory
uniqueECS88_2206protein lysA from Bacteriophage P2 (rev) [10075-10551]Accessory
uniqueECS88_2226cox,regulatory protein (rev) [2203653..2203928][11335-11661]Accessory
uniqueECS88_2894holin protein (rev) [2859758..2860162][12771-13226]Accessory
NC_011601 Escherichia coli O127:H6 str. E2348/69 chromosome, complete genome.
1E2348C_4478ampC,beta-lactamase (rev) [4725638..4726771][1-1134]Core
2E2348C_4501nsrR,transcriptional repressor NsrR (dir) [1185-1610]Core
3E2348C_1198thiK,thiamine kinase (dir) [1247588..1248412][1661-2485]Core
4E2348C_4670rimI,ribosomal-protein-alanine N-acetyltransferase [2536-2982]Core
5E2348C_0149sfsA,sugar fermentation stimulation protein [3033-3737]Core
6E2348C_4102hemD,uroporphyrinogen-III synthase (rev) [3788-4528]Core
7E2348C_4511yjfN,hypothetical protein (rev) [4763313..4763588][4579-4854]Core
8E2348C_1938yoaD,phosphodiesterase (dir) [1997400..1998998][4905-6503]Core
9E2348C_0622tolR,colicin uptake protein TolR (dir) [6554-6982]Core
10E2348C_3438yhbT,lipid carrier protein (rev) [3579032..3579556][7033-7557]Core
11E2348C_0104mutT,nucleoside triphosphate pyrophosphohydrolase [7608-8006]Core
uniqueE2348C_1389hypothetical protein (dir) [1432395..1432673][8118-8447]Accessory
uniqueE2348C_2780adenine methylase (dir) [2850320..2850913][8838-9482]Accessory
uniqueE2348C_2533antirepressor protein (rev) [2619317..2619517][10517-10768]Accessory
uniqueE2348C_0980excisionase (rev) [1044568..1044786][12054-12323]Accessory
uniqueE2348C_1010hypothetical protein (dir) [1058210..1058344][13878-14063]Accessory
uniqueE2348C_1071hypothetical protein (dir) [1119374..1120060][15803-16540]Accessory
NC_004337 Shigella flexneri 2a str. 301 chromosome, complete genome.
1SF4308ampC,beta-lactamase/D-alanine carboxypeptidase [1-1134]Core
2SF4333yjeB,transcriptional repressor NsrR (dir) [1185-1610]Core
3SF1110thiK,thiamine kinase (dir) [1150977..1151801][1661-2485]Core
4SF4404rimI,ribosomal-protein-alanine N-acetyltransferase [2536-2982]Core
5SF0138sfsA,DNA-binding transcriptional regulator [3033-3737]Core
6SF3876hemD,uroporphyrinogen-III synthase (rev) [3788-4528]Core
7SF4343yjfN,hypothetical protein (rev) [4520295..4520597][4579-4881]Core
8SF1413hypothetical protein (rev) [1450268..1451866][4932-6530]Core
uniqueSF2859hypothetical protein (rev) [2950472..2951461][6639-7679]Accessory
uniqueSF2860hypothetical protein (rev) [2951545..2952036][8778-9320]Accessory
uniqueSF2099rfbF,dTDP-rhamnosyl transferase (rev) [10961-11902]Accessory
uniqueSF1832IS1294 ORF (dir) [1871556..1872755][14484-15734]Accessory
uniqueSF3710hypothetical protein (dir) [3816150..3816344][19566-19811]Accessory
uniqueSF1133ahypothetical protein (dir) [1178175..1178408][23888-24172]Accessory
NC_012759 Escherichia coli BW2952 chromosome, complete genome.
1BWG_3865ampC,beta-lactamase (rev) [4314569..4315702][1-1134]Core
2BWG_3890nsrR,transcriptional repressor NsrR (dir) [1185-1610]Core
3BWG_0954thiK,thiamine kinase (dir) [1066408..1067232][1661-2485]Core
4BWG_4064rimI,ribosomal-protein-alanine N-acetyltransferase [2536-2982]Core
5BWG_0139sfsA,sugar fermentation stimulation protein [3033-3737]Core
6BWG_3483hemD,uroporphyrinogen-III synthase (rev) [3788-4528]Core
7BWG_3900yjfN,hypothetical protein (rev) [4352775..4353050][4579-4854]Core
8BWG_1628yoaD,putative phosphodiesterase (dir) [4905-6503]Core
uniqueBWG_3704Regulatory protein cro (dir) [4143642..4143842][6612-6863]Accessory
uniqueBWG_1262yncN,hypothetical protein (dir) [1399369..1399545][7173-7400]Accessory
uniqueBWG_1191racR,Rac prophage; putative DNA-bindin [7937-8464]Accessory
uniqueBWG_3926ytfI,hypothetical protein (dir) [4374465..4375403][9528-10517]Accessory
uniqueBWG_3926ytfI,hypothetical protein (dir) [4374465..4375403][12570-13559]Accessory
uniqueBWG_0157yaeI,phosphodiesterase YaeI (rev) [184256..185068][16601-17464]Accessory
NC_016822 Shigella sonnei 53G, complete genome.
1SSON53_25075ampC,beta-lactamase/D-alanine carboxypeptidase [1-1134]Core
2SSON53_25205transcriptional repressor NsrR (dir) [4789178..4789603][1185-1610]Core
3SSON53_06040thiK,thiamine kinase (dir) [1189101..1189925][1661-2485]Core
4SSON53_26150rimI,ribosomal-protein-alanine N-acetyltransferase [2536-2982]Core
5SSON53_00845putative DNA-binding transcriptional regulator [3033-3737]Core
6SSON53_22830hemD,uroporphyrinogen-III synthase (rev) [3788-4528]Core
7SSON53_25245hypothetical protein (rev) [4797404..4797679][4579-4854]Core
8SSON53_07300hypothetical protein (rev) [1404283..1405881][4905-6503]Core
9SSON53_03695colicin uptake protein TolR (dir) [743902..744330][6554-6982]Core
10SSON53_19200hypothetical protein (rev) [3610702..3611226][7033-7557]Core
uniqueSSON53_26115IS1 ORF2 (dir) [4950851..4951354][7668-8222]Accessory
uniqueSSON53_26115IS1 ORF2 (dir) [4950851..4951354][8837-9391]Accessory
uniqueSSON53_26115IS1 ORF2 (dir) [4950851..4951354][10560-11114]Accessory
uniqueSSON53_26115IS1 ORF2 (dir) [4950851..4951354][12837-13391]Accessory
uniqueSSON53_26115IS1 ORF2 (dir) [4950851..4951354][15668-16222]Accessory
uniqueSSON53_23815hypothetical protein (dir) [4501170..4501406][19053-19340]Accessory
NC_007384 Shigella sonnei Ss046 chromosome, complete genome.
1SSON_4336ampC,beta-lactamase (rev) [4604316..4605449][1-1134]Core
2SSON_4363yjeB,transcriptional repressor NsrR (dir) [1185-1610]Core
3SSON_1126thiK,thiamine kinase (dir) [1204551..1205375][1661-2485]Core
4SSON_4523rimI,ribosomal-protein-alanine N-acetyltransferase [2536-2982]Core
5SSON_0158sfsA,sugar fermentation stimulation protein [3033-3737]Core
6SSON_3976hemD,uroporphyrinogen-III synthase (rev) [3788-4528]Core
7SSON_4370yjfN,hypothetical protein (rev) [4641266..4641568][4579-4881]Core
8SSON_1345hypothetical protein (rev) [1419309..1420937][4932-6560]Core
uniqueSSON_4511IS1 ORF (dir) [4786637..4787140][6669-7223]Accessory
uniqueSSON_4511IS1 ORF (dir) [4786637..4787140][7836-8390]Accessory
uniqueSSON_4511IS1 ORF (dir) [4786637..4787140][9557-10111]Accessory
uniqueSSON_4511IS1 ORF (dir) [4786637..4787140][11832-12386]Accessory
uniqueSSON_4511IS1 ORF (dir) [4786637..4787140][14661-15215]Accessory
uniqueSSON_2684IS91 orf (dir) [2842150..2843337][18044-19282]Accessory
NC_010468 Escherichia coli ATCC 8739 chromosome, complete genome.
1EcolC_3860ampC,beta-lactamase (dir) [4218132..4219265][1-1134]Core
2EcolC_3835transcriptional repressor NsrR (rev) [4190461..4190886][1185-1610]Core
3EcolC_2495thiK,thiamine kinase (rev) [2745823..2746647][1661-2485]Core
4EcolC_3684rimI,ribosomal-protein-alanine N-acetyltransferase [2536-2982]Core
5EcolC_3513sugar fermentation stimulation protein [3033-3737]Core
uniqueEcolC_1610glycosyl transferase family protein (dir) [3843-4781]Accessory
uniqueEcolC_3884hypothetical protein (rev) [4248009..4252937][5775-10754]Accessory

Contact Information

Company Name: University of Pretoria
Website: http://bargene.bi.up.ac.za/
Email: oleg.reva@up.ac.za; repierneef@live.com; talk2adey100@gmail ;
Phone number:+27-12-420-5802